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Biomiga Plant RNA Midi Kit - R6612-00

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Description :

Introduction

The EZgeneTM Plant RNA Midiprep Kit provides a convenient and rapid method for isolating total RNA from a variety of plant samples. The kit introduces a homogenization column to efficiently remove cell debris and simultaneously homogenize the lysate. In combination with ezBind RNA spin column, high quality RNA can be extracted from as much as 500 mg tissue. Typical yields are shown in Table I. The EZgeneTM Plant RNA Kits are ideal for processing multiple plant samples in less than one hour. The need for organic extractions is eliminated, making total RNA isolation fast, safe, and reliable. Purified RNA has OD260/280 ratios of 1.8-2.0 and is suitable for the following applications.

  •  RT-PCR
  •  Northern Analysis
  •  Differential display
  •  Poly A+ RNA selection

Table I

Yields obtained with EZgeneTM Plant RNA Midi Kit

Arabidopsis sp

150 μg

Tobacco leaves

200 μg

Mustard leaves

150 μg

Maize

140 μg

 

Storage and Stability

All components of the EZgeneTM Plant RNA Kit should be stored at 22-25 oC. Under these conditions, RNA has successfully been purified and used for RT-PCR after 24 months of storage. Under cool ambient conditions, a precipitate may form in the Buffer LY. In case of such an event, heat the bottle at 37 oC to dissolve.  Store Buffer LY at room temperature.

Binding Capacity

Each ezBind RNA column can bind approximately 100 μg RNA. Using greater than 500 mg plant tissue usually will not dramatically improve yields and sometimes has adverse effects.

Kit Contents

Product

R6612-00

R6612-01

R6612-02

ezBind RNA columns

2

10

20

Homogenizer Midi Columns

2

10

20

Buffer PL

2 mL

5 mL

10 mL

Buffer P2

2 mL

10 mL

20 mL

Buffer LY

12 mL

60 mL

120mL

RNA Wash Buffer

6 mL

20 mL

2 x 20 mL

DNase Stop Buffer (Optional)

2 mL

12 mL

40 mL

DEPC-treated ddH2O

1.5 mL

10 mL

20 mL

User Manual

1

1

1

**Buffer LY contains a chaotropic salt. Use gloves and protective eyeware when handling this solution.

*DNase I are not supplied. They could be purchased from Biomiga.

 

Before Starting

Please take a few minutes to read this booklet thoroughly to become familiar with the protocol. Prepare all materials required before starting to minimize RNA degradation.

 

IMPORTANT

Dilute RNA Wash Buffer  with absolute ethanol as follow:

R6612-00: Add 24 mL 100 % ethanol

R6612-01: Add 80 mL 100 % ethanol

R6612-02: Add 80 mL 100% ethanol

Optional: Dilute DNase Stop Buffer  with absolute ethanol as follow:

R6612-00: Add 8 mL 100 % ethanol

R6612-01: Add 48 mL 100 % ethanol

R6612-02: Add 80 mL 100% ethanol

  •  Whenever working with RNA, always wear latex gloves to minimize RNase contamination. Change gloves frequently. Use only clean RNase-free disposable plastic pipette tips when using the supplied reagents.

 

  •  During the procedure work carefully but quickly.
  •  Under cool ambient conditions, crystals may form in Buffer LY. This is normal and the bottle may be warmed to dissolve the salt.

 

  •  β-mercaptoethanol (β-mercaptoethanol) is the key in denaturing endogenous RNases and must be added to an aliquot of Buffer LY before use. Add 10 μL of ß-mercaptoethanol per 1 mL of Buffer LY. This mixture can be stored for 1 week at room temperature.

 

Trouble Shooting Guide

 

Problems

Causes

Suggestions

Little or no RNA eluted

RNA remains on the column

Repeat elution.

Pre-heat DEPC-treated ddH2O to 70 oC prior to elution.

Incubate column for 10 minutes with water prior to centrifugation.

Column is overloaded

Reduce quantity of starting material.

Clogged column

Incomplete disruption or lysis of plant tissue.

Completely disrupt sample in liquid nitrogen.

Increase centrifugation time.

Reduce amount of starting material

Precipitated RNA will not dissolve.

High nucleic acid and polysaccharide content.

Reduce amount of starting material. Generally it is best to start with 50-100 mg at first.

To avoid RNA degradation, do not increase incubation time for resuspension.

Degraded RNA

Source

Freeze starting material quickly in liquid

nitrogen and store at -70 oC without thawing.

Follow protocol closely, and work quickly.

Make sure that β-mercaptoethanol is added to Buffer LY.

Use RB Buffer as dissolvent instead of DEPC-treated ddH2O

RNase contamination

Ensure not to introduce RNase during the procedure.

Check buffers for RNase contamination.

Problem in downstream applications

Salt carry-over during elution

Ensure RNA Wash Buffer has been diluted with 100% ethanol as indicated on bottle. Diluted RNA Wash Buffer must be stored at room temperature.

Repeat wash with RNA Wash Buffer.

DNA contamination

Co-purification of DNA

Digest with RNase-free DNase and inactivate at 75 oC for 5 minutes.

Low Abs ratios

RNA diluted in acidic buffer or water

DEPC-treated ddH2O is acidic and can dramatically lower Abs260 values. Use TE Buffer (pH 8.0) to dilute RNA prior to spec analysis.

 

 

 

 

Oprating Protocol:


  • Model: R6612-00
  • Manufactured by: Biomiga

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